SCQ0093738 - OMICS IN HUMAN DISEASE 2022-2023

Topic outline

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  SCQ0093738 - OMICS IN HUMAN DISEASE 2022-2023 - PROF. DENIS DOMINIQUE MARTINVALET

  • Announcements Forum
  • Educational Offer Page URL
  • istruzioni accessibilità URL
  • Modello slide 800 anni accessibili URL
  • OMICS IN HUMAN DISEASE 2022-2023 Pr. Martinvalet Zoom meeting
  • Lecture of the 04 & 05 10-2022 File
  • Lecture of the 11 & 12- 10-2022 File
  • Padlet: Introduce yourself URL

    Upload your photo. Write your name, your academic career, and what do you expect from this course. Say something that describes yourself.
    

  • Lecture of the 25 & 26- 10-2022 File
  • Lecture of the 02-11-2022 File
  • Lecture of the 08-11-2022 File
  • Lecture of the 16-11-2022 File
  • Lecture of the 22 &23 -11-2022 File
  • Lecture of the 6&7 13&14 -12-2022 File
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  1. BIOLOGICAL DATABASES

  • OMICS and Biological_DB 18-19 Oct2022 File
  • Exercises_27Oct2022_rev2 File

    This is the second new version of the file with further help following questions from some of you!
    

  • BD-Practical 1-Results File

    Here you can find the points you have obtained for the first practical on Biological Databases.

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  2. NGS DATA ANALYSIS

  • NGS METHODS File 4MB documento PDF
  • NGS data analysis FILE FORMAT 15 Nov 2022 2.5MB documento PDF
  • Practical 2_NGS_FASTQC File 637.6KB documento PDF Uploaded 16/11/22, 12:14

    Here you will find guidelines for installation, downloading the sample files in fastq format, and the link to the questions.

    Deadline 29 November 2022. You can complete the test in class!

    
    

  • Signup list for Initial Summary URL

    Please use this list to reserve a slot for doing the initial (5') summary of the lectures we have done (1. Biological Databases 2. NGS methods; 2.1 NGS data Analysis File Format). N.B. The Google sheet can be edited directly.

  • OMICS in HUMAN DISEASES 2022-23 URL

    Here you can find the Fastq files .zip and the list of files assigned to each of you.

  • Practical 2 FASTQC-Results File 192.7KB documento PDF Uploaded 19/12/22, 10:57
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  3. VARIANT INTERPRETATION

  • OMICS IN HUMAN DISEASES 2022-23 URL

    Material for the next Practical in VCF filtering. Here you can find the VCFs list assigned to each of you, the related VCF files, annovar .tsv or the annovar Google sheet files, and BAM files. 

  • NGS Data Analysis VCF processing_29_Nov_2022 File 5.2MB documento PDF Uploaded 30/11/22, 09:03
  • NGS Data Analysis VCF processing_30Nov2022 File 1.7MB documento PDF Uploaded 7/12/22, 12:30
  • Practical VCF Filtering Instructions File 485.7KB documento PDF Uploaded 7/12/22, 15:41
  • Practical 3 VCf Filtering Questions URL

    Here you can find the questions for the Practical 3 VCf Filtering. Deadline 15 December.

  • Practical 3 VCF filtering- Results File 189.6KB documento PDF Uploaded 7/02/23, 08:46
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  PPI network

  • STRING exercises File
  • PPI network File 15.3MB Presentazione Powerpoint 2007 Uploaded 14/12/22, 14:04
  • Practical 4_PPI network Cytoscape File
  • BONUS update 29 Dec 2022 File 191.7KB documento PDF Uploaded 29/12/22, 12:49
  • Practical 4 Cytoscape-Results File 188.2KB documento PDF Uploaded 30/01/23, 10:17
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  Exams

  • Exam 6-2-23 File Uploaded 15/02/23, 10:14